biomed-agent
Active·★ 16·Apache-2.0·Updated 2026-10-06
biomed-agent provides MCP server registration, diagnostics, and source-backed routing guidance for biomedical data sources including OpenTargets, Monarch, MyGene, MyChem, and MyDisease. It is designed for use with coding agents like Claude Code and Codex. The project includes a diagnostics CLI and a research contract for agents.
#ai-agent#bioinformatics#biomedical-research#drug-discovery#mcp#mcp-servers#model-context-protocol#monarch-initiative
01
Features
01MCP server registry and local path handling
02Diagnostics CLI for server and tool inspection
03Cross-server research contract for agents
04Example MCP registration in mcp.json
05Support for multiple biomedical data sources
02
Compatibility
Claude Code
Claude Code
Verified via docs
Codex
Codex
Verified via docs
Cursor
Cursor
Verified via docs
03
Quick start
1
$ uv sync
04
Use cases
↳Connecting AI agents to biomedical databases
↳Running diagnostics on MCP servers and tools
↳Conducting biomedical research with AI assistance
05
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