ClaudeR: ClaudeR is an R package that connects RStudio to MCP-configured LLM agents like Claude Code and Codex, enabling interactive coding, multi-agent orchestration, automated manuscript auditing, and data annotation. It provides a suite of MCP tools for direct code execution, plot generation, async execution, file reading, and more. The package includes built-in protocols for academic review (Reviewer Zero), statistical best practices, and multi-agent coordination.; context-mode: Every tool call in an MCP (Model-Controller-Program) environment dumps raw data into the context window, quickly consuming space and causing the agent to lose track of ongoing tasks. Context Mode is an MCP server that tackles this by sandboxing tool outputs to significantly reduce context usage, tracking session events in SQLite for continuity, and promoting 'think in code' to minimize data processing within the LLM.
Interactive coding with AI assistance
Deep repository research and analysis (e.g., architecture, contributors, issues)